With the development of the knowledge-based economy, the social and economic value of the knowledge-based enterprise organizations have become increasingly prominent, the benefits generated even more than the capital-intensive enterprises and technology-intensive enterprises. How to create maximum value for customers in the enterprise business process, reduce the cost of doing business, has become a topic that can’t be avoided in the knowledge-based enterprise management activities. This paper studies from the features and characteristics of the business processes of knowledge-based enterprises, from the organization's structure, behavior, culture, employees, innovation, customers, analyzes the characteristics of the knowledge-based enterprise business processes. And based on the analysis of strategies and methods of the study was to investigate the management of the knowledge-based business processes.