Prediction of human microRNA hairpins using only positive sample learning

Dang Hung Tran, Tho Hoan Pham, Kenji Satou, Tu Bao Ho

Journal of Biomedical Science and Engineering Vol.1 No.2

Full-Text HTML   Pub. Date: August 25, 2008

DOI: 10.4236/jbise.2008.12023   4,040 Downloads  7,513 Views  Citations

Application of Word Embedding to Drug Repositioning

Duc Luu Ngo, Naoki Yamamoto, Vu Anh Tran, Ngoc Giang Nguyen, Dau Phan, Favorisen Rosyking Lumbanraja, Mamoru Kubo, Kenji Satou

Journal of Biomedical Science and Engineering Vol.9 No.1

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DOI: 10.4236/jbise.2016.91002   4,608 Downloads  5,525 Views  Citations

A novel over-sampling method and its application to miRNA prediction

Xuan Tho Dang, Osamu Hirose, Thammakorn Saethang, Vu Anh Tran, Lan Anh T. Nguyen, Tu Kien T. Le, Mamoru Kubo, Yoichi Yamada, Kenji Satou

Journal of Biomedical Science and Engineering Vol.6 No.2A

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DOI: 10.4236/jbise.2013.62A029   3,852 Downloads  6,294 Views  Citations
This article belongs to the Special Issue on Bioinformatics and Biomedical Informatics

Predicting residue contacts for protein-protein interactions by integration of multiple information

Tu Kien T. Le, Osamu Hirose, Vu Anh Tran, Thammakorn Saethang, Lan Anh T. Nguyen, Xuan Tho Dang, Duc Luu Ngo, Mamoru Kubo, Yoichi Yamada, Kenji Satou

Journal of Biomedical Science and Engineering Vol.7 No.1

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DOI: 10.4236/jbise.2014.71005   4,142 Downloads  6,218 Views  Citations

Feature Analysis and Classification of Particle Data from Two-Dimensional Video Disdrometer

Sergey Gavrilov, Mamoru Kubo, Vu Anh Tran, Duc Luu Ngo, Ngoc Giang Nguyen, Lan Anh T. Nguyen, Favorisen Rosyking Lumbanraja, Dau Phan, Kenji Satou

Advances in Remote Sensing Vol.4 No.1

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DOI: 10.4236/ars.2015.41001   3,364 Downloads  3,931 Views  Citations

DNA Sequence Classification by Convolutional Neural Network

Ngoc Giang Nguyen, Vu Anh Tran, Duc Luu Ngo, Dau Phan, Favorisen Rosyking Lumbanraja, Mohammad Reza Faisal, Bahriddin Abapihi, Mamoru Kubo, Kenji Satou

Journal of Biomedical Science and Engineering Vol.9 No.5

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DOI: 10.4236/jbise.2016.95021   4,204 Downloads  7,115 Views  Citations

Combined Use of k-Mer Numerical Features and Position-Specific Categorical Features in Fixed-Length DNA Sequence Classification

Dau Phan, Ngoc Giang Nguyen, Favorisen Rosyking Lumbanraja, Mohammad Reza Faisal, Bahriddin Abapihi, Bedy Purnama, Mera Kartika Delimayanti, Mamoru Kubo, Kenji Satou

Journal of Biomedical Science and Engineering Vol.10 No.8

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DOI: 10.4236/jbise.2017.108030   730 Downloads  1,276 Views  Citations

Improving Protein Sequence Classification Performance Using Adjacent and Overlapped Segments on Existing Protein Descriptors

Mohammad Reza Faisal, Bahriddin Abapihi, Ngoc Giang Nguyen, Bedy Purnama, Mera Kartika Delimayanti, Dau Phan, Favorisen Rosyking Lumbanraja, Mamoru Kubo, Kenji Satou

Journal of Biomedical Science and Engineering Vol.11 No.6

Full-Text HTML XML   Pub. Date: June 29, 2018

DOI: 10.4236/jbise.2018.116012   437 Downloads  791 Views  Citations

Improved Protein Phosphorylation Site Prediction by a New Combination of Feature Set and Feature Selection

Favorisen Rosyking Lumbanraja, Ngoc Giang Nguyen, Dau Phan, Mohammad Reza Faisal, Bahriddin Abapihi, Bedy Purnama, Mera Kartika Delimayanti, Mamoru Kubo, Kenji Satou

Journal of Biomedical Science and Engineering Vol.11 No.6

Full-Text HTML XML   Pub. Date: June 29, 2018

DOI: 10.4236/jbise.2018.116013   461 Downloads  1,026 Views  Citations

Applying Deep Learning Models to Mouse Behavior Recognition

Ngoc Giang Nguyen, Dau Phan, Favorisen Rosyking Lumbanraja, Mohammad Reza Faisal, Bahriddin Abapihi, Bedy Purnama, Mera Kartika Delimayanti, Kunti Robiatul Mahmudah, Mamoru Kubo, Kenji Satou

Journal of Biomedical Science and Engineering Vol.12 No.2

Full-Text HTML XML   Pub. Date: February 28, 2019

DOI: 10.4236/jbise.2019.122012   359 Downloads  665 Views  Citations

D-IMPACT: A Data Preprocessing Algorithm to Improve the Performance of Clustering

Vu Anh Tran, Osamu Hirose, Thammakorn Saethang, Lan Anh T. Nguyen, Xuan Tho Dang, Tu Kien T. Le, Duc Luu Ngo, Gavrilov Sergey, Mamoru Kubo, Yoichi Yamada, Kenji Satou

Journal of Software Engineering and Applications Vol.7 No.8

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DOI: 10.4236/jsea.2014.78059   3,483 Downloads  5,092 Views  Citations
This article belongs to the Special Issue on Machine Learning

Predicting Βeta-Turns and Βeta-Turn Types Using a Novel Over-Sampling Approach

Lan Anh T. Nguyen, Xuan Tho Dang, Tu Kien T. Le, Thammakorn Saethang, Vu Anh Tran, Duc Luu Ngo, Sergey Gavrilov, Ngoc Giang Nguyen, Mamoru Kubo, Yoichi Yamada, Kenji Satou

Journal of Biomedical Science and Engineering Vol.7 No.11

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DOI: 10.4236/jbise.2014.711090   2,457 Downloads  3,043 Views  Citations

Evolution from Primitive Life to Homo sapiens Based on Visible Genome Structures: The Amino Acid World

Kenji Sorimachi

Natural Science Vol.1 No.2

Full-Text HTML   Pub. Date: September 28, 2009

DOI: 10.4236/ns.2009.12013   5,766 Downloads  11,012 Views  Citations

Genomic data provides simple evidence for a single origin of life

Kenji Sorimachi

Natural Science Vol.2 No.5

Full-Text HTML   Pub. Date: June 2, 2010

DOI: 10.4236/ns.2010.25065   5,331 Downloads  10,104 Views  Citations

Codon evolution in double-stranded organelle DNA: strong regulation of homonucleotides and their analog alternations

Kenji Sorimachi

Natural Science Vol.2 No.8

Full-Text HTML   Pub. Date: August 25, 2010

DOI: 10.4236/ns.2010.28106   4,644 Downloads  7,956 Views  Citations

Evolution based on genome structure: the “diagonal genome universe”

Kenji Sorimachi

Natural Science Vol.2 No.10

Full-Text HTML   Pub. Date: October 29, 2010

DOI: 10.4236/ns.2010.210137   5,764 Downloads  10,738 Views  Citations

A Comment on Reis

Kenji Miyazaki

Theoretical Economics Letters Vol.1 No.3

Full-Text HTML   Pub. Date: November 3, 2011

DOI: 10.4236/tel.2011.13019   5,067 Downloads  8,790 Views  Citations

Prosody and Quantifier Float in Japanese

Kenji Yokota

Open Journal of Modern Linguistics Vol.3 No.1

Full-Text HTML   Pub. Date: March 29, 2013

DOI: 10.4236/ojml.2013.31011   4,563 Downloads  6,457 Views  Citations

On the Distributive and Non-Distributive Interpretation in Japanese

Kenji Yokota

Open Journal of Modern Linguistics Vol.4 No.4

Full-Text HTML XML   Pub. Date: October 15, 2014

DOI: 10.4236/ojml.2014.44046   4,411 Downloads  4,876 Views  Citations

Towards a Proper Treatment of “NP-Related” Floating Numeral Quantifiers in Japanese

Kenji Yokota

Open Journal of Modern Linguistics Vol.5 No.4

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DOI: 10.4236/ojml.2015.54033   4,359 Downloads  4,739 Views  Citations