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Shen, H.B. and Chou, K.C. (2005) Predicting Protein Subnuclear Location with Optimized Evidence-Theoretic K-Nearest Classifier and Pseudo Amino Acid Composition. Biochemical and Biophysical Research Communications (BBRC), 337, 752-756. https://doi.org/10.1016/j.bbrc.2005.09.117
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Shen, H.B., Yang, J., Liu, X.J. and Chou, K.C. (2005) Using Supervised Fuzzy Clustering to Predict Protein Structural Classes. Biochemical and Biophysical Research Communications (BBRC), 334, 577-581.
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Chou, K.C. and Shen, H.B. (2006) Hum-PLoc: A Novel Ensemble Classifier for Predicting Human Protein Subcellular Localization. Biochemical and Biophysical Research Communications (BBRC), 347, 150-157.
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Chou, K.C. and Shen, H.B. (2006) Predicting Eukaryotic Protein Subcellular Location by Fusing Optimized Evidence-Theoretic K-Nearest Neighbor Classifiers. Journal of Proteome Research, 5, 1888-1897.
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Chou, K.C. and Shen, H.B. (2007) Euk-mPLoc: A Fusion Classifier for Large-Scale Eukaryotic Protein Subcellular Location Prediction by Incorporating Multiple Sites. Journal of Proteome Research, 6, 1728-1734.
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Chou, K.C. and Shen, H.B. (2007) Signal-CF: A Subsite-Coupled and Window-Fusing Approach for Predicting Signal Peptides. Biochemical and Biophysical Research Communications (BBRC), 357, 633-640.
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Chou, K.C. and Shen, H.B. (2007) MemType-2L: A Web Server for Predicting Membrane Proteins and Their Types by Incorporating Evolution Information through Pse-PSSM. Biochemical and Biophysical Research Communications (BBRC), 360, 339-345. https://doi.org/10.1016/j.bbrc.2007.06.027
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Liu, D.Q., Liu, H., Shen, H.B., Yang, J. and Chou, K.C. (2007) Predicting Secretory Protein Signal Sequence Cleavage Sites by Fusing the Marks of Global Alignments. Amino Acids, 32, 493-496.
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Shen, H.B. and Chou, K.C. (2007) Gpos-PLoc: An Ensemble Classifier for Predicting Subcellular Localization of Gram-Positive Bacterial Proteins. Protein Engineering, Design, and Selection, 20, 39-46.
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Shen, H.B. and Chou, K.C. (2007) EzyPred: A Top-Down Approach for Predicting Enzyme Functional Classes and Subclasses. Biochemical and Biophysical Research Communications (BBRC), 364, 53-59.
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Shen, H.B. and Chou, K.C. (2007) Nuc-PLoc: A New Web-Server for Predicting Protein Subnuclear Localization by Fusing PseAA Composition and PsePSSM. Protein Engineering, Design & Selection, 20, 561-567.
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Shen, H.B., Yang, J. and Chou, K.C. (2007) Review: Methodology Development for Predicting Subcellular Localization and Other Attributes of Proteins. Expert Review of Proteomics, 4, 453-463.
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Chou, K.C. and Shen, H.B. (2008) ProtIdent: A Web Server for Identifying Proteases and Their Types by Fusing Functional Domain and Sequential Evolution Information. Biochemical and Biophysical Research Communications (BBRC), 376, 321-325. https://doi.org/10.1016/j.bbrc.2008.08.125
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Shen, H.B. and Chou, K.C. (2008) HIVcleave: A Web-Server for Predicting HIV Protease Cleavage Sites in Proteins. Analytical Biochemistry, 375, 388-390. https://doi.org/10.1016/j.ab.2008.01.012
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Shen, H.B. and Chou, K.C. (2010) Gneg-mPLoc: A Top-Down Strategy to Enhance the Quality of Predicting Subcellular Localization of Gram-Negative Bacterial Proteins. Journal of Theoretical Biology, 264, 326-333.
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Fang, Y., Guo, Y., Feng, Y. and Li, M. (2008) Predicting DNA-Binding Proteins: Approached from Chou’s Pseudo Amino Acid Composition and Other Specific Sequence Features. Amino Acids, 34, 103-109.
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Cao, J.Z., Liu, W.Q. and Gu, H. (2012) Predicting Viral Protein Subcellular Localization with Chou’s Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K-Nearest Neighbor Algorithm. Protein and Peptide Letters, 19, 1163-1169. https://doi.org/10.2174/092986612803216999
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Chen, C., Shen, Z.B. and Zou, X.Y. (2012) Dual-Layer Wavelet SVM for Predicting Protein Structural Class via the General Form of Chou’s Pseudo Amino Acid Composition. Protein & Peptide Letters, 19, 422-429.
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Fan, G.L. and Li, Q.Z. (2012) Predict Mycobacterial Proteins Subcellular Locations by Incorporating Pseudo- Average Chemical Shift into the General Form of Chou’s Pseudo Amino Acid Composition. Journal of Theoretical Biology, 304, 88-95. https://doi.org/10.1016/j.jtbi.2012.03.017
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Fan, G.L. and Li, Q.Z. (2012) Predicting Protein Submitochondria Locations by Combining Different Descriptors into the General Form of Chou’s Pseudo Amino Acid Composition. Amino Acids, 43, 545-555.
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Nanni, L., Lumini, A., Gupta, D. and Garg, A. (2012) Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou’s Pseudo Amino Acid Composition and on Evolutionary Information. IEEE-ACM Transaction on Computational Biology and Bioinformatics, 9, 467-475.
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Ren, L.Y., Zhang, Y.S. and Gutman, I. (2012) Predicting the Classification of Transcription Factors by Incorporating their Binding Site Properties into a Novel Mode of Chou’s Pseudo Amino Acid Composition. Protein & Peptide Letters, 19, 1170-1176. https://doi.org/10.2174/092986612803217088
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Fan, G.L. and Li, Q.Z. (2013) Discriminating Bioluminescent Proteins by Incorporating Average Chemical Shift and Evolutionary Information into the General Form of Chou’s Pseudo Amino Acid Composition. Journal of Theoretical Biology, 334, 45-51. https://doi.org/10.1016/j.jtbi.2013.06.003
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Huang, C. and Yuan, J.Q. (2013) Predicting Protein Subchloroplast Locations with Both Single and Multiple Sites via Three Different Modes of Chou’s Pseudo Amino Acid Compositions. Journal of Theoretical Biology, 335, 205-212. https://doi.org/10.1016/j.jtbi.2013.06.034
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