|
[1]
|
Kozminski, K.G., Johnson, K.A., Forscher, P. and Rosenbaum, J.L. (1993) A Motility in the Eukaryotic Flagellum Unrelated to Flagellar Beating. Proceedings of the National Academy of Sciences of the United States of America, 90, 5519-5523.
http://dx.doi.org/10.1073/pnas.90.12.5519
|
|
[2]
|
Hao, L. and Scholey, J.M. (2009) Intraflagellar Transport at a Glance. Journal of Cell Science, 122, 889-892.
http://dx.doi.org/10.1242/jcs.023861
|
|
[3]
|
Scholey, J.M. and Anderson, K.V. (2006) Intraflagellar Transport and Cilium-Based Signaling. Cell, 125, 439-442.
http://dx.doi.org/10.1016/j.cell.2006.04.013
|
|
[4]
|
Bhogaraju, S., Engel, B.D. and Lorentzen, E. (2013) Intraflagellar Transport Complex Structure and Cargo Interactions. Cilia, 2, 10.
http://dx.doi.org/10.1186/2046-2530-2-10
|
|
[5]
|
Badano, J.L., Mitsuma, N., Beales, P.L. and Katsanis, N. (2006) The Ciliopathies: An Emerging Class of Human Genetic Disorders. Annual Review of Genomics and Human Genetics, 7, 125-148.
http://dx.doi.org/10.1146/annurev.genom.7.080505.115610
|
|
[6]
|
Absalon, S., Blisnick, T., Kohl, L., Toutirais, G., Dore, G., Julkowska, D., et al. (2008) Intraflagellar Transport and Functional Analysis of Genes Required for Flagellum Formation in Trypanosomes. Molecular Biology of the Cell, 19, 929-944.
http://dx.doi.org/10.1091/mbc.E07-08-0749
|
|
[7]
|
Taschner, M., Bhogaraju, S. and Lorentzen, E. (2012) Architecture and Function of IFT Complex Proteins in Ciliogenesis. Differentiation, 83, S12-S22.
http://dx.doi.org/10.1016/j.diff.2011.11.001
|
|
[8]
|
Delaval, B., Bright, A., Lawson, N.D. and Doxsey, S. (2011) The Cilia Protein IFT88 Is Required for Spindle Orientation in Mitosis. Nature Cell Biology, 13, 461-468.
http://dx.doi.org/10.1038/ncb2202
|
|
[9]
|
Pazour, G.J., Dickert, B.L., Vucica, Y., Seeley, E.S., Rosenbaum, J.L., Witman, G.B., et al. (2000) Chlamydomonas IFT88 and Its Mouse Homologue, Polycystic Kidney Disease Gene tg737, Are Required for Assembly of Cilia and Flagella. The Journal of Cell Biology, 151, 709-718.
http://dx.doi.org/10.1083/jcb.151.3.709
|
|
[10]
|
Schrick, J.J., Onuchic, L.F., Reeders, S.T., Korenberg, J., Chen, X.N., Moyer, J.H., et al. (1995) Characterization of the Human Homologue of the Mouse Tg737 Candidate Polycystic Kidney Disease Gene. Human Molecular Genetics, 4, 559-567.
http://dx.doi.org/10.1093/hmg/4.4.559
|
|
[11]
|
You, N., Liu, W., Tang, L., Zhong, X., Ji, R., Zhang, N., et al. (2012) Tg737 Signaling Is Required for Hypoxia-Enhanced Invasion and Migration of Hepatoma Cells. Journal of Experimental Clinical Cancer Research, 31, 75.
http://dx.doi.org/10.1186/1756-9966-31-75
|
|
[12]
|
McIntyre, J.C., Davis, E.E., Joiner, A., Williams, C.L., Tsai, I.C., Jenkins, P.M., et al. (2012) Gene Therapy Rescues Cilia Defects and Restores Olfactory Function in a Mammalian Ciliopathy Model. Nature Medicine, 18, 1423-1428.
http://dx.doi.org/10.1038/nm.2860
|
|
[13]
|
Robert, A., Margall-Ducos, G., Guidotti, J.E., Bregerie, O., Celati, C., Brechot, C., et al. (2007) The Intraflagellar Transport Component IFT88/Polaris Is a Centrosomal Protein Regulating G1-S Transition in Non-Ciliated Cells. Journal of Cell Science, 120, 628-637.
http://dx.doi.org/10.1242/jcs.03366
|
|
[14]
|
Freitas, M.J., Korrodi-Gregorio, L., Morais-Santos, F., da Cruz, E.S.E. and Fardilha, M. (2014) TCTEX1D4 Interactome in Human Testis: Unraveling the Function of Dynein Light Chain in Spermatozoa. Omics, 18, 242-253.
http://dx.doi.org/10.1089/omi.2013.0133
|
|
[15]
|
Meng, Q., Lux, A., Holloschi, A., Li, J., Hughes, J.M., Foerg, T., et al. (2006) Identification of Tctex2beta, a Novel Dynein Light Chain Family Member That Interacts with Different Transforming Growth Factor-Beta Receptors. Journal of Biological Chemistry, 281, 37069-37080.
http://dx.doi.org/10.1074/jbc.M608614200
|
|
[16]
|
Dinkel, H., Michael, S., Weatheritt, R.J., Davey, N.E., Van Roey, K., Altenberg, B., et al. (2012) ELM—The Database of Eukaryotic Linear Motifs. Nucleic Acids Research, 40, D242-D251.
http://dx.doi.org/10.1093/nar/gkr1064
|
|
[17]
|
de Castro, E., Sigrist, C.J., Gattiker, A., Bulliard, V., Langendijk-Genevaux, P.S., Gasteiger, E., et al. (2006) ScanProsite: Detection of PROSITE Signature Matches and Prorule-Associated Functional and Structural Residues in Proteins. Nucleic Acids Research, 34, W362-W365.
http://dx.doi.org/10.1093/nar/gkl124
|
|
[18]
|
Letunic, I., Doerks, T. and Bork, P. (2012) SMART 7: Recent Updates to the Protein Domain Annotation Resource. Nucleic Acids Research, 40, D302-D305.
http://dx.doi.org/10.1093/nar/gkr931
|
|
[19]
|
Karpenahalli, M.R., Lupas, A.N. and Soding, J. (2007) TPRpred: A Tool for Prediction of TPR-, PPR- and SEL1-Like Repeats from Protein Sequences. BMC Bioinformatics, 8, 2.
http://dx.doi.org/10.1186/1471-2105-8-2
|
|
[20]
|
Blom, N., Sicheritz-Ponten, T., Gupta, R., Gammeltoft, S. and Brunak, S. (2004) Prediction of Post-Translational Glycosylation and Phosphorylation of Proteins from the Amino Acid Sequence. Proteomics, 4, 1633-1649.
http://dx.doi.org/10.1002/pmic.200300771
|
|
[21]
|
Blom, N., Gammeltoft, S. and Brunak, S. (1999) Sequence and structure-Based Prediction of Eukaryotic Protein Phosphorylation Sites. Journal of Molecular Biology, 294, 1351-1362.
http://dx.doi.org/10.1006/jmbi.1999.3310
|
|
[22]
|
de Castro, E., Sigrist, C.J., Gattiker, A., Bulliard, V., Langendijk-Genevaux, P.S., Gasteiger, E., et al. (2006) ScanProsite: Detection of PROSITE Signature Matches and ProRule-Associated Functional and Structural Residues in Proteins. Nucleic Acids Research, 34, W362-W365.
http://dx.doi.org/10.1093/nar/gkl124
|
|
[23]
|
Petersen, T.N., Brunak, S., von Heijne, G. and Nielsen, H. (2011) SignalP 4.0: Discriminating Signal Peptides from Transmembrane Regions. Nature Methods, 8, 785-786.
http://dx.doi.org/10.1038/nmeth.1701
|
|
[24]
|
Bologna, G., Yvon, C., Duvaud, S. and Veuthey, A.L. (2004) N-Terminal Myristoylation Predictions by Ensembles of Neural Networks. Proteomics, 4, 1626-1632.
http://dx.doi.org/10.1002/pmic.200300783
|
|
[25]
|
Petersen, B., Petersen, T.N., Andersen, P., Nielsen, M. and Lundegaard, C. (2009) A Generic Method for Assignment of Reliability Scores Applied to Solvent Accessibility Predictions. BMC Structural Biology, 9, 51.
http://dx.doi.org/10.1186/1472-6807-9-51
|
|
[26]
|
del-Toro, N., Dumousseau, M., Orchard, S., Jimenez, R.C., Galeota, E., Launay, G., et al. (2013) A New Reference Implementation of the PSICQUIC Web Service. Nucleic Acids Research, 41, W601-W606.
http://dx.doi.org/10.1093/nar/gkt392
|
|
[27]
|
Hendrickx, A., Beullens, M., Ceulemans, H., Den Abt, T., Van Eynde, A., Nicolaescu, E., et al. (2009) Docking Motif- Guided Mapping of the Interactome of Protein Phosphatase-1. Chemistry Biology, 16, 365-371.
http://dx.doi.org/10.1016/j.chembiol.2009.02.012
|
|
[28]
|
Reid, A.T., Redgrove, K., Aitken, R.J. and Nixon, B. (2011) Cellular Mechanisms Regulating Sperm-Zona Pellucida Interaction. Asian Journal of Andrology, 13, 88-96.
http://dx.doi.org/10.1038/aja.2010.74
|
|
[29]
|
Mannowetz, N., Kartarius, S., Wennemuth, G. and Montenarh, M. (2010) Protein Kinase CK2 and New Binding Partners during Spermatogenesis. Cellular and Molecular Life Sciences, CMLS, 67, 3905-3913.
http://dx.doi.org/10.1007/s00018-010-0412-9
|
|
[30]
|
Lamb, J.R., Tugendreich, S. and Hieter, P. (1995) Tetratrico Peptide Repeat Interactions, To TPR or Not to TPR? Trends in Biochemical Sciences, 20, 257-259.
http://dx.doi.org/10.1016/S0968-0004(00)89037-4
|
|
[31]
|
Barlow, C., Liyanage, M., Moens, P.B., Tarsounas, M., Nagashima, K., Brown, K., Rottinghaus, S., Jackson, S.P., Tagle, D., Ried, T. and Wynshaw-Boris, A. (1998) Atm Deficiency Results in Severe Meiotic Disruption as Early as Leptonema of Prophase I. Development, 125, 4007-4017.
|
|
[32]
|
Cohen, P.T. (2002) Protein Phosphatase 1—Targeted in Many Directions. Journal of Cell Science, 115, 241-256.
|
|
[33]
|
Yamazaki, H., Nakata, T., Okada, Y. and Hirokawa, N. (1995) KIF3A/B: A Heterodimeric Kinesin Superfamily Protein that Works as a Microtubule Plus End-Directed Motor for Membrane Organelle Transport. Journal of Cell Biology, 130, 1387-1399.
http://dx.doi.org/10.1083/jcb.130.6.1387
|
|
[34]
|
Chen, J., Yu, L., Li, D., Gao, Q., Wang, J., Huang, X., Bi, G., Wu, H. and Zhao, S.Y. (2003) Human CRYL1, a Novel Enzyme-Crystallin Overexpressed in Liver and Kidney and Downregulated in 58% of Liver Cancer Tissues from 60 Chinese Patients, and Four New Homologs from Other Mammalians. Gene, 302, 103-113.
http://dx.doi.org/10.1016/S0378-1119(02)01095-8
|
|
[35]
|
Erlich, H.A., Valdes, A.M., Julier, C., Mirel, D. and Noble, J.A. (2009) Evidence for Association of the TCF7 Locus with Type I Diabetes. Genes and Immunity, 10, S54-S59.
http://dx.doi.org/10.1038/gene.2009.92
|
|
[36]
|
Guyot, R., Vincent, S., Bertin, J., Samarut, J. and Ravel-Chapuis, P. (2010) The Transforming Acidic Coiled Coil (TACC1) Protein Modulates the Transcriptional Activity of the Nuclear Receptors TR and RAR. BMC Molecular Biology, 11, 3.
http://dx.doi.org/10.1186/1471-2199-11-3
|
|
[37]
|
Hou, X., Mrug, M., Yoder, B.K., Lefkowitz, E.J., Kremmidiotis, G., D’Eustachio, P., Beier, D.R. and Guay-Woodford, L.M. (2002) Cystin, a Novel Cilia-Associated Protein, Is Disrupted in the cpk Mouse Model of Polycystic Kidney Disease. Journal of Clinical Investigation, 109, 533-540.
http://dx.doi.org/10.1172/JCI0214099
|
|
[38]
|
Hu, S.S., Sun, W.Y., Wei, W., Wang, D., Jin, J., Wu, J.J., Chen, J.Y., Wu, H.X. and Wang, Q.T. (2013) Involvement of the Prostaglandin E Receptor EP2 in Paeoniflorin-Induced Human Hepatoma Cell Apoptosis. Anticancer Drugs, 24, 140-149.
http://dx.doi.org/10.1097/CAD.0b013e32835a4dac
|
|
[39]
|
Murakami, H., Mizuno, T., Taniguchi, T., Fujii, M., Ishiguro, F., Fukui, T., et al. (2011) LATS2 Is a Tumor Suppressor Gene of Malignant Mesothelioma. Cancer Research, 71, 873-883.
http://dx.doi.org/10.1158/0008-5472.CAN-10-2164
|
|
[40]
|
Pontoglio, M. (2000) Hepatocyte Nuclear Factor 1, a Transcription Factor at the Crossroads of Glucose Homeostasis. Journal of the American Society of Nephrology, 11, S140-S143.
|
|
[41]
|
To, S.Q., Takagi, K., Miki, Y., Suzuki, K., Abe, E., Yang, Y., Sasano, H., Simpson, E.R., Knower, K.C. and Clyne, C.D. (2012) Epigenetic Mechanisms Regulate the Prostaglandin E Receptor 2 in Breast Cancer. Journal of Steroid Biochemistry and Molecular Biology, 132, 331-338.
http://dx.doi.org/10.1016/j.jsbmb.2012.07.007
|
|
[42]
|
Zheng, M., Zheng, K., Zhou, J.F., Sun, H.Y., Huang, L.F. and Liu, W.L. (2012) Tcf-1 Gene Silence Suppresses Downstream Gene Expression in CD4(+) T Cells from Bone Marrow of Aplastic Anemia Patients. Annals of Hematology, 91, 353-358.
http://dx.doi.org/10.1007/s00277-011-1314-0
|