[1]
|
Naylor, M.G., Lin, X., Weiss, S.T., Raby, B.A and Lange, C. (2010) Using canonical correlation analysis to discover gentic regulatory variants. PloS One, 5, e10395.
|
[2]
|
Vansteelandt S. (2009) Estimating direct effects in cohort and case-control studies. Epidemiology, 20, 851-860.
doi:10.1097/EDE.0b013e3181b6f4c9
|
[3]
|
Vansteelandt, S., Geotgeluk, S., Lutz, S., Waldman, I., Lyon, H., Schadt, E.E., Weiss, S.T. and Lange, C. (2009) On the adjustment for covariates in genetic association analysis: A novel, simple principle to infer direct causal effects. Genetic Epidemiology, 33, 394-405.
doi:10.1002/gepi.20393
|
[4]
|
Lipman, P.J., Liu, K.Y., Muehlschlegel, J.D., Body, S. and Lange, C. (2010) Inferring genetic causal effects on survival data with associated endo-phenotypes. Genetic Epidemiology, 35, 119-124. doi:10.1002/gepi.20557s
|
[5]
|
Schadt E. E., Lamb J., Yang, X., Zhu, J. and Edwards, S. (2005) An integrative genomics approach to infer causal associations between gene expression and disease. Nature Genetics, 37, 710-717. doi:10.1038/ng1589
|
[6]
|
Kulp, D.C. and Jagalur, M. (2006) Causal inference of regulator-target pairs by gene mapping of expression phenotypes. BMC Genomics, 7, 125.
doi:10.1186/1471-2164-7-125
|
[7]
|
Aten, J.E., Fuller, T.F., Lusis, A.J. and Horvath, S. (2008) Using genetic markers to orient the edges in quantitative trait networks: The NEO software. BMC Systems Biology, 2, 34. doi:10.1186/1752-0509-2-34
|
[8]
|
Millstein J., Zhang, B., Zhu, J. and Schadt, E.E. (2009) Disentangling molecular relationships with a causal inference test. BMC Genetics, 10, 23.
doi:10.1186/1471-2156-10-23
|
[9]
|
Duarte, C. W. and Zeng, Z.B. (2011) High-confidence discovery of genetic network regulators in expression quantitative trait loci data. Genetics, 187, 955-964.
doi:10.1534/genetics.110.124685
|
[10]
|
Chen, L.S., Emmert-Streib, F. and Storey, J.D. (2007) Harnessing naturally randomized transcription to infer regulatory relationships among genes. Genome Biology, 8, R219. doi:10.1186/gb-2007-8-10-r219
|
[11]
|
Li, R., Tsaih, S.W., Shockley, K., Stylianou, I.M., Wergedal, J., Paigen, B. and Churchill, G.A. (2006) Structural model analysis of multiple quantitative traits. PLoS Genetics, 2, e114. doi:10.1371/journal.pgen.0020114
|
[12]
|
Imai, K., Keele, L., Tingley, D. and Yamamoto, T. (2010) Causal mediation analysis using R. In: Vinod, H.D., Ed., Advances in Social Science Research Using R, Springer, New York, 129-154.
|
[13]
|
Imai, K., Keele, L. and Tingley, D. (2010) A general approach to causal mediation analysis. Psychological Methods, 15, 309-334. doi:10.1037/a0020761
|
[14]
|
Imai, K., Keele, L. and Yamamoto, T. (2010) Identification, inference, and sensitivity analysis for causal mediation effects. Statistical Science, 25, 51-71.
doi:10.1214/10-STS321
|
[15]
|
Imai, K., Keele, L., Tingley, D. and Yamamoto, T. (2011) Unpacking the black box: Learning about causal mechanisms from experimental and observational studies. American Political Science Review, 105, 765-789.
doi:10.1017/S0003055411000414
|
[16]
|
The Childhood Asthma Management Program Research Group (2000) Long-term effects of budesonide or nedocromil in children with asthma. The New England Journal of Medicine, 343, 1054-1063.
doi:10.1056/NEJM200010123431501
|
[17]
|
The Childhood Asthma Management Program Research Group (1999) The childhood asthma management program (CAMP): Design, rationale, and methods. Controlled Clinical Trials, 20, 91-120.
doi:10.1016/S0197-2456(98)00044-0
|
[18]
|
Carlin, B.P. and Louis, T.A. (2009) Bayesian methods for data analysis. Chapman and Hall/CRC Press, Boca Raton.
|
[19]
|
Gelman, A., Carlin, J.B., Stern, H.S. and Rubin, D.B. (2003) Bayesian data analysis. Chapman and Hall/CRC Press, Boca Raton.
|
[20]
|
O’Hagan, A. and Foster, J. (2004) Kendall’s advanced theory of statistics: Bayesian inference. Edward Arnold Press, London.
|
[21]
|
Spiegelhalter, D.J., Abrams, K.R. and Myles, J.P. (2004) Bayesian approaches to clinical trials and health-care evaluation. John Wiley and Sons, Chichester.
|
[22]
|
Chipman, H., George, E.I. and McCulloch, R.E. (2001) The practical implementation of Bayesian model selection. IMS Lecture Notes—Monograph Series, 38, 65-134.
doi:10.1214/lnms/1215540964
|
[23]
|
Yuan, M. and Lin, Y. (2005) Efficient empirical Bayes variable selection and estimation in linear models. Journal of the American Statistical Association, 100, 1215-1225. doi:10.1198/016214505000000367
|
[24]
|
Gelman, A. (2006) Prior distributions for variance parameters in hierarchical models. Bayesian Analysis, 3, 515-533.
|
[25]
|
Robert, C.P. and Casella, G. (2004) Monte Carlo statistical methods. Springer, New York.
doi:10.1007/978-1-4757-4145-2
|