This paper first discusses the problems existing in the innovative personnel training system under the background of engineering education certification, and then analyzes the research approaches and methods of the “innovative” personnel training system of measurement and control specialty. Finally, combined with the characteristics of the specialty and the background of the current engineering education specialty, it focuses on the analysis of the relationship between the industry and social needs and the target concept system, the curriculum module and the key elements of graduation requirements. On the basis of discussing how to build the supporting conditions and continuous improvement mechanism of innovation and entrepreneurship and practical education, this paper puts forward how to build the “innovative” talent training system which is composed of four parts: the target concept system, the training implementation system, the training support system and the continuous improvement system.