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Natural Science

Natural Science

Natural Science

ISSN Print: 2150-4091
ISSN Online: 2150-4105
www.scirp.org/journal/ns
E-mail: ns@scirp.org
"Cell-PLoc 2.0: an improved package of web-servers for predicting subcellular localization of proteins in various organisms"
written by Kuo-Chen Chou, Hong-Bin Shen,
published by Natural Science, Vol.2 No.10, 2010
has been cited by the following article(s):
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[58] Extensive inter-plant protein transfer between Cuscuta parasites and their host plants
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[105] pNitro-Tyr-PseAAC: Predict Nitrotyrosine Sites in Proteins by Incorporating Five Features into Chou's General PseAAC
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[106] pLoc_bal-mPlant: Predict Subcellular Localization of Plant Proteins by General PseAAC and Balancing Training Dataset
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[118] pLoc_bal-mHum: Predict subcellular localization of human proteins by PseAAC and quasi-balancing training dataset
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[142] Protein subcellular localization prediction using multiple kernel learning based support vector machine
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[144] Novel Feature Extraction for Predicting Gram-Positive and Gram-Negative Bacteria Protein Sub-cellular Localization
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[145] PREDICTION OF PROTEIN SUBCELLULAR LOCALIZATION OF HUMAN PROTEIN USING J48, RANDOM FOREST AND BEST FIRST TREE TECHNIQUES
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[146] Prediction of protein subcellular localization using support vector machine with the choice of proper kernel
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[147] Supplementary Materials for FUEL-mLoc Web-Server
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[148] Hum-mPLoc 3.0: prediction enhancement of human protein subcellular localization through modeling the hidden correlations of gene ontology and functional domain …
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[149] FUEL-mLoc: feature-unified prediction and explanation of multi-localization of cellular proteins in multiple organisms
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[150] Protein sub-cellular localization based on noise-intensity-weighted linear discriminant analysis and an improved k-nearest-neighbor classifier
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[151] A multi-label feature extraction algorithm via maximizing feature variance and feature-label dependence simultaneously
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[152] A New Multi-label Classifier for Identifying the Functional Types of Singleplex and Multiplex Antimicrobial Peptides
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[153] Protein fold recognition using HMM-HMM alignment and Dynamic Programming
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[154] mGOF-Loc: A Novel Ensemble Learning Method for Human Protein Subcellular Localization Prediction
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[155] Identification of S-glutathionylation sites in species-specific proteins by incorporating five sequence-derived features into the general pseudo-amino acid composition
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[156] Classifying Multifunctional Enzymes by Incorporating Three Different Models into Chou's General Pseudo Amino Acid Composition
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[157] RNA-MethylPred: A high-accuracy predictor to identify N6-methyladenosine in RNA
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[158] OH-PRED: prediction of protein hydroxylation sites by incorporating adapted normal distribution bi-profile Bayes feature extraction and physicochemical properties of …
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[168] Predicting Subcellular Localization of Proteins by Bioinformatic Algorithms
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[169] Using Chou's Pseudo Amino Acid Composition and Machine Learning Method to Predict the Antiviral Peptides
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[170] Machine learning for protein subcellular localization prediction
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[171] Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC
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[172] iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition
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[173] Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences
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[174] Impacts of bioinformatics to medicinal chemistry
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[175] Subcellular localization for Gram Positive and Gram Negative Bacterial Proteins using Linear Interpolation Smoothing Model
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[177] Protein subcellular localization: gene ontology based machine learning approaches
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[178] Dual Fuzzy Hypergraph Regularized Multi-label Learning for Protein Subcellular Location Prediction
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[182] Gram-Positive and Gram-Negative Subcellular Localization Using Rotation Forest and Physicochemical-Based Features
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[183] Prediction of Protein Secondary Structure Using Feature Selection and Analysis Approach
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[184] Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
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[185] Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM
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[186] Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble
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[187] Multi-Label Learning With Fuzzy Hypergraph Regularizition for Protein Subcellular Location Prediction
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[188] iSS-PseDNC: Identifying Splicing Sites Using Pseudo Dinucleotide Composition
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[189] Robust feature generation for protein subchloroplast location prediction with a weighted GO transfer model
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[193] A feature extraction Q3 technique
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[198] Novel Ensemble Predictor for Gram-positive Bacterial Protein Sequences
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[203] Mining Proteins with Non-Experimental Annotations Based on an Active Sample Selection Strategy for Predicting Protein Subcellular Localization
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[204] iCDI-PseFpt: identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints
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[205] A simple k-word interval method for phylogenetic analysis of DNA sequences
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[206] Na\ve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins
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[207] Multilabel learning via random label selection for protein subcellular multilocations prediction
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[208] Naive Bayes classifier with feature selection to identify phage virion proteins
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[210] Predicting acidic and alkaline enzymes by incorporating the average chemical shift and gene ontology informations into the general form of Chou's PseAAC
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[211] Stability of halophilic proteins: from dipeptide attributes to discrimination classifier
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[212] A novel ensemble and composite approach for classifying proteins based on Chou's pseudo amino acid composition
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[213] A simple< i> k-word interval method for phylogenetic analysis of DNA sequences
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[214] Prediction of metabolic pathway using graph property, chemical functional group and chemical structural set
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[215] iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
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[216] iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition
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[217] Some remarks on predicting multi-label attributes in molecular biosystems
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[218] iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins
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[219] GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-am
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[220] iEzy-Drug: A web server for identifying the interaction between enzymes and drugs in cellular networking
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[221] A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
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[222] iGPCR-Drug: A web server for predicting interaction between GPCRs and drugs in cellular networking
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[223] A Multilabel Model Based on Chou’s Pseudo–Amino Acid Composition for Identifying Membrane Proteins with Both Single and Multiple Functional Types
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[224] Role of Cation-π Interactions in the Structural Stability of Bacterial Adhesins
Protein and peptide letters, 2013
[225] Involvement of phosphatidate phosphatase in the biosynthesis of triacylglycerols in Chlamydomonas reinhardtii
Journal of Zhejiang University SCIENCE B, 2013
[226] Prediction of Temperature Optimum in Enzymatic Reaction of Beta-Cellobiosidases with Exhausted Jackknife Validation
Life Science Journal, 2013
[227] Mining Proteins with Non-Experimental Annotations Based on an Active Sample Selection Strategy for Predicting Protein Subcellula
PloS one, 2013
[228] Predicting Biological Functions of Protein Complexes Using Graphic and Functional Features.
Current Bioinformatics, 2013
[229] Locating apoptosis proteins by incorporating the signal peptide cleavage sites into the general form of Chou's Pseudo amino acid
International Journal of Quantum Chemistry, 2013
[230] A Two-step Similarity-based Method for Prediction of Drug's Target Group
Protein and peptide letters, 2013
[231] Predict Subcellular Locations of Singleplex and Multiplex Proteins by Semi-Supervised Learning and Dimension-Reducing General Mode of Chou's PseAAC
2013
[232] Identification of antioxidants from sequence information using Naive Bayes
Computational and mathematical methods in medicine, 2013
[233] Fast multi-label core vector machine
Pattern Recognition, 2013
[234] A simple iterative method to optimize protein–ligand-binding residue prediction
Journal of theoretical biology, 2013
[235] Prediction of cancer rescue p53 mutants in silico using Na?ve Bayes learning methodology
Protein and peptide letters, 2013
[236] A novel integrated method for human multiplex protein subcellular localization prediction
2013 IEEE International Conference on Big Data, 2013
[237] Subcelluar localization of orf126 of Bombyx mori nucleopolyhedrovirus
African Journal of Biotechnology,, 2013
[238] Identifying the singleplex and multiplex proteins based on transductive learning for protein subcellular localization prediction
Biotechnology letters, 2013
[239] EcmPred: Prediction of extracellular matrix proteins based on random forest with maximum relevance minimum redundancy feature selection
Journal of theoretical biology, 2013
[240] Molecular and biochemical characterisation of esterases from oenococcus oeni and their potential for application in wine.
Thesis (Ph.D.) -- University of Adelaide, School of Agriculture, Food and Wine, 2013
[241] LIBP-Pred: web server for lipid binding proteins using structural network parameters; PDB mining of human cancer biomarkers and drug targets in parasites and bacteria
Molecular BioSystems, 2012
[242] Using the improved position specific scoring matrix and ensemble learning method to predict drug-binding residues from protein sequences
Natural Science, 2012
[243] Proteomic and Bioinformatics Tools to Understand Virulence Mechanisms in Staphylococcus aureus
Current Proteomics, 2012
[244] GNeg-CEF: Gram-negative bacterial protein prediction using ensemble approach for individual feature extraction strategies
Emerging Technologies (ICET), 2012 International Conference on. IEEE, 2012
[245] An adaptation of Pfam profiles to predict protein sub-cellular localization in Gram positive bacteria
Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE. IEEE, 2012
[246] 基因表达数据小波降噪与肿瘤识别
生物数学学报, 2012
[247] Homology Modeling and Antagonist Binding Site Study of the Human Histamine H2 Receptor
Medicinal Chemistry, 2012
[248] Validation of the use of multiple internal control genes, and the application of real-time quantitative PCR, to study esterase gene expression in Oenococcus oeni
Applied microbiology and biotechnology, 2012
[249] Exhausted Jackknife Validation Exemplified by Prediction of Temperature Optimum in Enzymatic Reaction of Cellulases
Applied biochemistry and biotechnology, 2012
[250] Predicting the metabolic pathways of small molecules based on their physicochemical properties
Protein and peptide letters, 2012
[251] Nucleosome positioning based on the sequence word composition
Protein and peptide letters, 2012
[252] Generation of pharmacophore and atom based 3D-QSAR model of novel isoquinolin-1-one and quinazolin-4-one-type inhibitors of TNF
Medicinal Chemistry, 2012
[253] PSCL: Predicting protein subcellular localization based on optimal functional domains
Protein and peptide letters, 2012
[254] Ranking Gene Ontology terms for predicting non-classical secretory proteins in eukaryotes and prokaryotes
Journal of theoretical biology, 2012
[255] SOMEViz: a web service for site of metabolism estimating and visualizing
Protein and peptide letters, 2012
[256] Prediction of nicotinamide adenine dinucleotide interacting sites based on ensemble support vector machine
Protein and peptide letters, 2012
[257] SCYPPred: A Web-Based Predictor of SNPs for Human Cytochrome P450
Protein and peptide letters, 2012
[258] Enhancing membrane protein subcellular localization prediction by parallel fusion of multi-view features
NanoBioscience, IEEE Transactions on, 2012
[259] Recent Advances in Predicting G-Protein Coupled Receptor Classification
Current Bioinformatics, 2012
[260] Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
Journal of theoretical biology, 2012
[261] Computational Prediction of Protein Subcellular Locations in Eukaryotes: an Experience Report
Computational Molecular Biology, 2012
[262] Wavelet images and Chou's pseudo amino acid composition for protein classification
2012
[263] Imbalanced Multi-Modal Multi-Label Learning for Subcellular Localization Prediction of Human Proteins with Both Single and Multiple Sites
PloS one, 2012
[264] Prediction of membrane proteins using split amino acid and ensemble classification
Amino acids, 2012
[265] Identification of amino acid propensities that are strong determinants of linear B-cell epitope using neural networks
PloS one, 2012
[266] mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines
BMC bioinformatics, 2012
[267] Predicting protein submitochondria locations by combining different descriptors into the general form of Chou's pseudo amino acid composition
Amino Acids, 2012
[268] Prediction of protein subcellular multi-localization based on the general form of Chou's pseudo amino acid composition
Protein and peptide letters, 2012
[269] Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
Journal of Theoretical Biology, 2012
[270] Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
Journal of Theoretical Biology, 2012
[271] Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 2012
[272] iLoc-Gpos: A multi-layer classifier for predicting the subcellular localization of singleplex and multiplex gram-positive bacter
Protein and peptide letters, 2012
[273] A segmented principal component analysis—regression approach to QSAR study of peptides
Journal of theoretical biology, 2012
[274] Predict mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
Journal of theoretical biology, 2012
[275] Prediction of human genes' regulatory functions based on proteinprotein interaction network
Protein and peptide letters, 2012
[276] Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature representation
Molecular BioSystems, 2012
[277] Predicting Viral Protein Subcellular Localization with Chou's Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K
Protein and peptide letters, 2012
[278] Prediction of optimal pH and temperature of cellulases using neural network
Protein and peptide letters, 2012
[279] Bioinformatics Data Mining Using an Improved Boosting Method and Chou's pseudo amino acid composition.
Y Wang, J Lin, H feng Fan - Journal of Convergence Information Technology, 2012, 2012
[280] Mem-PHybrid: hybrid features-based prediction system for classifying membrane protein types
Analytical biochemistry, 2012
[281] Predicting metabolic pathways of small molecules and enzymes based on interaction information of chemicals and proteins
PloS one, 2012
[282] Analysis of metabolic pathway using hybrid properties
Protein and peptide letters, 2012
[283] Imbalanced Multi-Modal Multi-Label Learning for Subcellular Localization Prediction of Human Proteins with Both Single and
2012
[284] Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature …
2012
[285] LIBP-Pred: web server for lipid binding proteins using structural network parameters; PDB mining of human cancer biomarkers and drug targets in parasites and …
2012
[286] 真核生物蛋白质亚细胞定位的计算预测: 一个经验报告
2012
[287] A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single
PloS one, 2011
[288] In vitro transcriptomic prediction of hepatotoxicity for early drug discovery
Journal of Theoretical Biology, 2011
[289] Algorithm of Insulin Human P01308-Position 102-Determinante 2029
International Journal of Biochemistry Research & Review, 2011
[290] Theoretical study of GSK−3α: neural networks QSAR studies for the design of new inhibitors using 2D descriptors
2011
[291] CE-PLoc: an ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition
Computational Biology and Chemistry, 2011
[292] Image-derived Generative Models for Three-dimensional Cellular Organization
ProQuest Dissertations Publishing, 2011
[293] Molecular Biocoding of Insulin–Amino Acid Ser
2011
[294] On the relation between residue flexibility and residue interactions in proteins
Protein and peptide letters, 2011
[295] Predicting homo-oligomers and hetero-oligomers by pseudo-amino acid composition: An approach from discrete wavelet transformation
Biochimie, 2011
[296] Molecular biocoding of insulin-amino acid Ser
Journal Of Bioengineering & Biomedical Science, 2011
[297] SemiHS: An Iterative Semi-Supervised Approach for Predicting Proteinprotein Interaction Hot Spots
Protein and peptide letters, 2011
[298] Multi-label learning for protein subcellular location prediction
Bioinformatics and Biomedicine (BIBM), 2011 IEEE International Conference on. IEEE, 2011
[299] Theoretical study of GSK? 3α: neural networks QSAR studies for the design of new inhibitors using 2D descriptors
Molecular diversity, 2011
[300] Discrimination of Thermostable and Thermophilic Lipases using Support Vector Machines
Protein and peptide letters, 2011
[301] Computer-Based Comparison of Structural Features of Envelope Protein of Alkhurma Hemorrhagic Fever Virus with the Homologous Proteins of Two Closest Viruses
Protein and peptide letters, 2011
[302] Remote data retrieval for bioinformatics applications: An agent migration approach
PloS one, 2011
[303] Prediction of GPCRs with Pseudo Amino Acid Composition: Employing Composite Features and Grey Incidence Degree Based Classification
Protein and peptide letters, 2011
[304] Analyses of Protein Sequences Using Inter-Residue Average Distance Statistics to Study Folding Processes and the Significance of Their Partial Sequences
Protein and peptide letters, 2011
[305] Compressed learning and its applications to subcellular localization
Protein and peptide letters, 2011
[306] A Novel Fuzzy Fisher Classifier for Signal Peptide Prediction
Protein and peptide letters, 2011
[307] Gaussian process: a promising approach for the modeling and prediction of peptide binding affinity to MHC proteins
Protein and peptide letters, 2011
[308] Improved prediction of protein ligand-binding sites using Random Forests
Protein and peptide letters, 2011
[309] Using the concept of pseudo amino acid composition to predict resistance gene against Xanthomonas oryzae pv. oryzae in rice: An approach from chaos games representation
Journal of theoretical biology, 2011
[310] Prediction of rat protein subcellular localization with pseudo amino acid composition based on multiple sequential features
Protein and peptide letters, 2011
[311] QSAR Study on MHC Class IA Alleles Based on the Novel Parameters of Amino Acids
Protein and peptide letters, 2011
[312] Predicting the activity of ACE inhibitory peptides with a novel mode of pseudo amino acid composition
Protein and peptide letters, 2011
[313] Searching of predictors to predict pH optimum of cellulases
Applied biochemistry and biotechnology, 2011
[314] In vitro transcriptomic prediction of hepatotoxicity for early drug discovery
Journal of theoretical biology, 2011
[315] 3D QSAR pharmacophore modeling, in silico screening, and density functional theory (DFT) approaches for identification of human
International journal of molecular sciences, 2011
[316] Recent advances in protein-protein interaction prediction: experimental and computational methods
Expert opinion on drug discovery, 2011
[317] iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple
Molecular BioSystems, 2011
[318] Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
Journal of Theoretical Biology, 2011
[319] Some remarks on protein attribute prediction and pseudo amino acid composition
Journal of theoretical biology, 2011
[320] iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins
PLoS One, 2011
[321] GPCR-2L: Predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
Molecular Biosystems, 2011
[322] iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
Journal of Theoretical Biology, 2011
[323] A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites
PloS one, 2011
[324] AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
Journal of Theoretical Biology, 2011
[325] Using pseudo amino acid composition to predict protease families by incorporating a series of protein biological features
Protein and Peptide Letters, 2011
[326] Using a novel AdaBoost algorithm and Chou's pseudo amino acid composition for predicting protein subcellular localization
Protein and peptide letters, 2011
[327] Prediction of body fluids where proteins are secreted into based on protein interaction network
PLoS One, 2011
[328] Predicting transcriptional activity of multiple site p53 mutants based on hybrid properties
PLoS One, 2011
[329] Identify submitochondria and subchloroplast locations with pseudo amino acid composition: approach from the strategy of discrete wavelet transform feature extraction
2011
[330] Recent progress in predicting protein sub-subcellular locations
2011
[331] CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino
Computational biology and chemistry, 2011
[332] Identification of multiple subcellular locations for proteins in budding yeast
Current Bioinformatics, 2011
[333] Predicting Protein Subcellular Localization by Pseudo Amino Acid Composition with a Segment-Weighted and Features-Combined Approach
Protein and Peptide Letters, 2011
[334] An efficient support vector machine approach for identifying protein S-nitrosylation sites
Protein and peptide letters, 2011
[335] Predicting apoptosis protein subcellular location with PseAAC by incorporating tripeptide composition
Protein and peptide letters, 2011
[336] Improved sequence-based prediction of strand residues
Journal of bioinformatics and computational biology, 2011
[337] Iatrogenic effects of Orthodontic treatment–Review on white spot lesions
Int J Sci Eng Res, 2011
[338] A Novel Method to Predict Protein-Protein Interactions Based on the Information of Protein-Protein Interaction Networks and Protein Sequence
Protein and peptide letters, 2011
[339] Algorithm of Insulin Human P01308–discrete code 2029
International Journal of Scientific and Engineering Research (IJSER) , 2011
[340] Algorithm and computational complexity of biochemistry
Journal of Chemical Engineering and Materials Science, 2011
[341] Molecular docking and pharmacophore model studies of Rho kinase inhibitors
Molecular Simulation, 2011
[342] Algorithm of Insulin Human P01308–Amino acids Thr, Asn, and Pro
BIOMIRROR, 2011
[343] 贝塔-葡萄糖苷酶催化反应的最适pH 值和最适温度的同时预测
广西科学, 2011
[344] Molecular biocoding of insulin–amino acid Gly
International Journal of Scientific and Engineering Research (IJSER)-March, 2011
[345] gorithm of Insulin Human P01308-Position 102-Determinante 2029.
International Journal of Biochemistry Research & Review, 2011
[346] Nonsense‐mediated decay targets have multiple sequence‐related features that can inhibit translation
2010
[347] aestivum L.
[348] MOLECULAR DISSECTION AND AN IN-SILICO APPROACH OF A NOVEL GIBBERELLIN 20-OXIDASE GENE OF HIBISCUS CANNABINUS L.
[349] Cysteine-Mediated Extracellular Electron Transfer of Lysinibacillus Varians Gy32
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