Quantitative Analysis of Pathway Enrichment within Faba Bean Seeds RNA-Seq (Vicia faba L) - American Journal of Plant Sciences

AJPS > Vol.10 No.12, December 2019

Quantitative Analysis of Pathway Enrichment within Faba Bean Seeds RNA-Seq (Vicia faba L) ()

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DOI: 10.4236/ajps.2019.1012161 623 Downloads 1,573 Views Citations

Author(s)

Shi Y. Yang^1*, Nuredin Habili², Qi Wu², Yunjie Wang³, Jiang Li⁴, Jeffrey G. Paull¹

Affiliation(s)

¹School of Agriculture Food and Wine, The University of Adelaide, Waite Campus, Waite Road, Urrbrae, SA, Australia.
²The Australian Wine Research Institute, Urrbrae (Adelaide) SA, Australia.
³BGI-Shenzhen, BGI Tech Solutions Co., Ltd., Beishan Industrial Zone, Shenzhen, China.
⁴BIOZERON Biotech (Shenzhen) Co., Ltd., Shengzhen, China.

ABSTRACT

Faba bean (Vicia faba L) seeds are an important source of plant protein for humans and animals. A total of 15,697 Differentially Expressed Genes (DEGs) with pathway annotation were discovered in RNA-Seq of the faba bean seeds. A total of 75 significant KEGG pathways abundance were discovered and 9 pathways were conserved within all genotypes. 41 significant pathways were found to be partially conserved within comparisons of 2 to 6 pairs of genotypes and 25 significant pathways were unique to single pairs of genotypes. There were 8 specific significant pathways discovered related to the faba bean seed Hydration Capacity trait and 9 specific significant pathways discovered related to the PSbMV seeds staining trait. The DEGs demonstrated the genetic distance between these varieties was confirmed by the breeding pedigree selection information and a PCA graph clearly illustrated the genetic distance within these genotypes.

KEYWORDS

RNA-Seq (Quantification), Faba Bean (Vicia faba), Seed, Pathway Enrichment, Quantitative Analysis

Share and Cite:

Yang, S. , Habili, N. , Wu, Q. , Wang, Y. , Li, J. and Paull, J. (2019) Quantitative Analysis of Pathway Enrichment within Faba Bean Seeds RNA-Seq (Vicia faba L). American Journal of Plant Sciences, 10, 2305-2334. doi: 10.4236/ajps.2019.1012161.

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