Dr. Shuli Kang
Molecular and Computational Biology Program
Department of Biological Sciences
University of Southern California, USA
Research Associate
Email:
kangshuli@gmai.com (preferred), shulikan@usc.edu
Qualifications
2008 Ph.D., Microbiology, Wuhan University, China
2003 B.Sc., National Education Base of Life Sciences,
Wuhan University, China
Publications
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Corominas R*, Yang X*, Lin GN*, Kang S*, Shen Y, Ghamsari L, Broly M,
Rodriguez M, Tam S, Trigg SA, Fan C, Yi S, Tasan M, Lemmens I, Kuang X, Zhao N,
Malhotra D, Michaelson JJ, Vacic V, Calderwood MA, Roth FP, Tavernier J,
Horvath S, Salehi-Ashtiani K, Korkin D, Sebat J, Hill DE, Hao T, Vidal M,
Iakoucheva LM. Protein interaction network of alternatively spliced isoforms
from brain links genetic risk factors for autism. Nat Commun. 2014 Apr 11; 5: 3650. (* Equal
contribution)
-
Li W, Dai C, Kang
S, Zhou XJ. Integrative analysis of many RNA-seq datasets to study alternative
splicing. Methods. 2014 Jun 1; 67(3): 313-24.
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Li W*, Kang S*,
Liu CC, Zhang S, Shi Y, Liu Y, Zhou XJ. High-resolution functional annotation
of human transcriptome: predicting isoform functions by a novel multiple
instance-based label propagation method. Nucleic
Acids Res. 2014
Apr; 42(6): e39. Epub 2013 Dec 25. (* Equal contribution)
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Michaelson JJ, Shi Y, Gujral M, Zheng H, Malhotra D, Jin X,
Jian M, Liu G, Greer D, Bhandari A, Wu W, Corominas R, Peoples A, Koren A, Gore
A, Kang S, Lin GN, Estabillo J,
Gadomski T, Singh B, Zhang K, Akshoomoff N, Corsello C, McCarroll S, Iakoucheva
LM, Li Y, Wang J, Sebat J. Whole-genome sequencing in autism identifies hot
spots for de novo germline mutation. Cell. 2012 Dec 21; 151(7): 1431-42.
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Mills RE, Kang
S, [57 authors], Korbel JO & 1000 Genomes Project. Mapping copy number
variation by population scale genome sequencing. Nature. 2011 Feb
3; 470(7332): 59-65.
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Liao Q, Liu C, Yuan X, Kang
S, Miao R, Xiao H, Zhao G, Luo H, Bu D, Zhao H, Skogerbø G, Wu Z, Zhao Y.
Large-scale prediction of long non-coding RNA functions in a coding-non-coding
gene co-expression network. Nucleic
Acids Res. 2011
May; 39(9): 3864-78. Epub 2011 Jan 18.
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Kang S, Chen G, Xiao G. Robust prediction of
mutation-induced protein stability change by property encoding of amino acids. Protein Eng Des Sel. 2009.
22(2): p. 75-83.
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Yuan X, Liu C, Yang P, He S, Liao Q, Kang S, Zhao Y. Clustered micro RNAs'
coordination in regulating protein-protein interaction network. BMC Syst Biol. 2009 Jun 26; 3: 65.
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Xiao F, Zuo Z, Cai G, Kang
S, Gao X, Li T. miRecords: an integrated resource for microRNA-target
interactions. Nucleic Acids
Res. 2009. 37(Database
issue): p. D105-10.
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Wan J*, Kang
S*, Tang C, Yan J, Ren Y, Liu J, Gao X, Banerjee A, Ellis LB, Li T.
Meta-prediction of phosphorylation sites with weighted voting and restricted
grid search parameter selection. Nucleic
Acids Res. 2008
Mar;36(4): e22. Epub 2008 Jan 30. (* Equal contribution)
-
Gong W, Ren Y, Zhou H, Wang Y, Kang S, Li T. siDRM: an effective and
generally applicable online siRNA design tool. Bioinformatics, 2008. 24(20):
p. 2405-6.
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Liu J, Kang
S, Tang C, Ellis LB, Li T. Meta-prediction of protein subcellular localization
with reduced voting. Nucleic
Acids Res. 2007; 35(15): e96.
Epub 2007 Aug 1.
-
Peng X, Pan J, Gong R, Liu Y, Kang S, Feng H, Qiu G, Guo D, Tien P,
Xiao G. Functional characterization of syncytin-A, a newly murine endogenous
virus envelope protein. Implication for its fusion mechanism. J Biol Chem. 2007 Jan 5; 282(1): 381-9. Epub 2006 Nov
14.
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Gong R, Peng X, Kang
S, Feng H, Huang J, Zhang W, Lin D, Tien P, Xiao G. Structural characterization
of the fusion core in syncytin, envelope protein of human endogenous retrovirus
family W. Biochem Biophys Res
Commun. 2005 Jun 17;
331(4): 1193-200.
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Yu SL, Jin L, Sy MS, Mei FH, Kang SL, Sun GH, Tien P, Wang FS, Xiao
GF. Polymorphisms of the PRNP gene in Chinese populations and the
identification of a novel insertion mutation. Eur
J Hum Genet. 2004 Oct; 12
(10): 867-70.
Profile Details
Last Updated: August,
2014
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