Dr. Pavel Kraikivski

Academy of Integrated Science, Division of Systems Biology
Virginia Tech, USA

Email: kraikivski@gmail.com, pavelkr@vt.edu

Qualifications

2005 Ph.D., Max-Planck Institute for Colloids and Interfaces, Potsdam, Germany
2000 M.Sc., St.-Petersburg State Technical University, Russia
1996 B.Sc., St.-Petersburg State Technical University, Russia

Publications (Selected)

1. Kraikivski, P. (2022). A Dynamic Mechanistic Model of Perceptual Binding. Mathematics, 10(7), 1135.
2. Jung, Y., Kraikivski, P., Shafiekhani, S., Terhune, S. S., & Dash, R. K. (2021). Crosstalk between Plk1, p53, cell cycle, and G2/M DNA damage checkpoint regulation in cancer: computational modeling and analysis. NPJ Systems Biology and Applications, 7(1).
3. Jalihal, A. P., Kraikivski, P., Murali, T. M., & Tyson, J. J. (2021). Modeling and analysis of the macronutrient signaling network in budding yeast. Molecular Biology of the Cell, 32(21).
4. Kraikivski, P. (2021). Implications of Noise on Neural Correlates of Consciousness: A Computational Analysis of Stochastic Systems of Mutually Connected Processes. Entropy 23(5), 583.
5. Shafiekhani, S., Kraikivski, P., Gheibi N., Ahmadian M., Jafari, H. A. (2021). Dynamical Analysis of the Fission Yeast Cell Cycle: A Markov Chain Model. Current Genetics. DOI: 10.1007/s00294-020-01146-z.
6. Clarke, R., P. Kraikivski, Jones, B. C., Sevigny, C. M., Sengupta, S., & Wang, Y. (2020). A systems biology approach to discovering pathway signaling dysregulation in metastasis. Cancer and Metastasis Reviews. 39(3), 903-918.
7. Kraikivski P. Systems of Oscillators Designed for a Specific Conscious Percept (2020). Mathematics and Natural Computation, 16(1), 73-88.
8. Gallegos J.E., N.R. Adames, M.F. Rogers, P. Kraikivski, A. Ibele, K. Nurzynski-Loth, E. Kudlow, T.M. Murali, J. J. Tyson, J. Peccoud. (2020) Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants. NPJ Systems Biology and Applications 6(1).
9. J. Tyson, T. Laomettachit , P. Kraikivski. (2019) Modeling the Dynamic Behavior of Biochemical Regulatory Networks. Journal of Theoretical Biology 462:514-527.
10. A. Pratapa, N. Adames, P. Kraikivski, J. J. Tyson, J. Peccoud, T. M. Murali. 2018. CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. Bioinformatics. 34(13) 2237–2244.
11. A. Bharadwaj, D. P. Singh, A. Ritz, A. N. Tegge, C. L. Poirel, P. Kraikivski, N. Adames, K. Luther, S. D. Kale, J. Peccoud, J. J. Tyson, T. M. Murali. GraphSpace: Stimulating Interdisciplinary Collaborations in Network Biology. Bioinformatics, 33(19) 3134–3136.
12. Kraikivski P. Building Systems Capable of Consciousness. (2017). Mind and Matter. Volume 15(2) 185-195.
13. Rezaul K., D. Gupta, I. Semenova, K. Ikeda, P. Kraikivski, A. Cowan, I. Zaliapin, and V. Rodionov. (2016). Engineered tug-of-war between cytoplasmic dynein and kinesin in vivo. Traffic. 17(5) 475–486.
14. Kraikivski P., K.C. Chen, T. Laomettachit, T.M. Murali, and J. J. Tyson. 2015. From Start to Finish: Computational Analysis of Cell Cycle Control in Budding Yeast. Systems Biology and Applications, a Nature partner journal, 1, Article number 15016.
15. I. Semenova, K. Ikeda, K. Resaul, P. Kraikivski, M. Aguiar, S. Gygi, I. Zaliapin, A. Cowan, and V. Rodionov. (2014). Regulation of microtubule-based transport by MAP4. Mol. Biol. Cell. 25(20) 3119-32.
16. Kraikivski P. (2013). Do Cells Make Decisions Based on Uncertainty in their Biochemical Networks? Biophys. J. 104(10) 2121-2122.
17. Lomakin A. J., P. Kraikivski, I. Semenova, K. Ikeda, I. Zaliapin, J. S. Tirnauer, A. Akhmanova, and V. Rodionov. (2011). Stimulation of the CLIP-170-dependent capture of membrane organelles by microtubules through fine-tuning of microtubule assembly dynamics. Molecular Biology of the Cell. 22 (21) 4029-4037.
18. Novak I. L., F. Gao, P. Kraikivski, and B. M. Slepchenko. (2011). Diffusion amidst random overlapping obstacles: similarities, invariants, approximations. J. Chem. Phys. 134 154104.
19. Kraikivski P., and B. M. Slepchenko. (2010). Quantifying a pathway: Kinetic analysis of actin dendritic nucleation. Biophys. J. 99(3) 708-715 (Featured Article).
20. Lomakin A. J., I. Semenova, I. Zaliapin, P. Kraikivski, E. Nadezhdina, B. M. Slepchenko, A. Akhmanova, and V. Rodionov. (2009). CLIP-170 Dependent Capture of Membrane Organelles by Microtubules Initiates Minus-End Directed Transport. Dev. Cell 17: 323–333.
21. Kraikivski P., B. M. Slepchenko, and I. L. Novak. (2008). Actin Bundling: Initiation Mechanisms and Kinetics. Phys. Rev. Lett. 101:128102(4).

Profile Details

http://sites.google.com/site/kraikivski