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Price N D, Reed J L, Palsson B O. (2004) Genome-scale models of microbial cells: evaluating the consequences of constraints. Nature Reviews Microbiology, 2(11), 886-897.
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J.L. Reed, T.D. Vo, C.H. Schilling, and B.O. Palsson. (2003) An expanded genome scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biology, 4, R54.1– R54.12.
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Feist, A.M., Henry, C.S., Reed, J.L., Krummenacker, M., Joyce, A.R., Karp, P.D., Broadbelt, L.J., Hatzimanikatis, V., Palsson, B.? (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Molecular Systems Biology, 3, Art. No. 121.
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Scott A Becker, Bernhard ?Palsson. (2005) Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. BMC Microbiol, 5, Art. No. 8.
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Ines Thiele, Thuy D. Vo, Nathan D. Price, and Bernhard Palsson. (2005) Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double- deletion mutants. Journal of Bacteriology, 187 (16), 5818-5830.
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Adam M Feist, Johannes C M Scholten, Bernhard Palsson, Fred J Brockman, Trey Ideker. (2006) Modeling methanogenesis with a genome-scale metabolic recon-struction of Methanosarcina barkeri. Molecular Systems Biology, 2, Art. No. 2006.0004.
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Natalie C. Duarte, Markus J. Herrgard and Bernhard Palsson. (2004) Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome- scale metabolic model . Genome Res, 14 (7), 1298 -1309.
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Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R. (2007) Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. J Biol Chem, 282 (39), 28791-28799.
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Becker, S.A., Feist, A.M., Mo, M. L., Hannum, G., Palsson, B.O., Herrgard, M.J. (2007) Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox. Nat. Protocols, 2(3), 727-738.
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Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S. Baliga, Jonathan T. Wang, Daniel amage, Nada Amin, Benno Schwikowski and Trey Ideker. (2003) Cytoscape: a software environment for integrated models of biomo- lecular interaction networks. Genome Res, 13 (11), 2498-2504.
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R. Mahadevan and B. O. Palsson. (2005) Properties of Metabolic Networks: Structure versus Function. Biophysical Journal, 88(1), L07-L09.
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Bala zs Papp, Csaba Pa l , Laurence D. Hurst. (2004) Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature, 429(6992), 661-664.
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Iman Famili, Jochen Foster, Jens Nielsen, Bernhard O. Palsson. (2003) Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proceedings of the National Academy of Sciences of the United States of America, 100(23), 13134-13139.
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Jochen Foster, Iman Famili, Bernhard o Palsson, Jens Nielsen. (2003) Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae. Omics, 7, 193-202.
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