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P. A. Kollman, I. Massova, C. Reyes, B. Kuhn, S. Huo, L. Chong, M. Lee, T. Lee, Y. Duan, W. Wang, O. Donini, P. Cieplak, J. Srinivasan, D. A. Case and T. E. Cheatham, III, “Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models,” Accounts of Chemical Research, Vol. 33, No. 12, 2000, pp. 889-897. doi:10.1021/ar000033j
has been cited by the following article:
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TITLE:
BEAR, a Molecular Docking Refinement and Rescoring Method
AUTHORS:
Andrew Anighoro, Giulio Rastelli
KEYWORDS:
Virtual Screening; Bear; Structure-Based Drug Design
JOURNAL NAME:
Computational Molecular Bioscience,
Vol.3 No.2,
June
10,
2013
ABSTRACT: BEAR (Binding Estimation After Refinement) is a computational method for structure-based virtual screening. It was set up as a post-docking processing tool for the refinement of ligand binding modes predicted by molecular docking programs and the accurate evaluation of free energies of binding. BEAR has been validated in a number of computational drug discovery applications. It performed well in discriminating active ligands with respect to molecular decoys of biological targets belonging to different protein families as well as in discovering biologically active hits. Recently, it has also been validated in the emerging field of G-protein coupled receptors structure based virtual screening.
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