[1]
|
Jairin, J., Kotchasatit, U., Saleeto, S., Jearakongman, S., Srivillai, K., Chamarerk, V., Kotcharerk, J., Pattawatang, P., Korinsak, S., Wongsaprom, C. and Toojinda, T. (2017) Application of Marker-Assisted Breeding to Improve Biotic Stress Resistance for Rainfed Lowland Rice in Northeastern Thailand. SABRAO Journal of Breeding and Genetics, 49, 168-178.
|
[2]
|
Vanavichit, A., Kamolsukyeunyong, W., Siangliw, M., Siangliw, J.L., Traprab, S., Ruengphayak, S., Chaichoompu, E., Saensuk, C., Phuvanartnarubal, E., Toojinda, T. and Tragoonrung, S. (2018) Thai Hom Mali Rice: Origin and Breeding for Subsistence Rainfed Lowland Rice System. Rice, 11, 20.
https://doi.org/10.1186/s12284-018-0212-7
|
[3]
|
Sansen, K., Wongboon, W., Jairin, J. and Kato, Y. (2019) Farmer-Participatory Evaluation of Mechanized Dry Direct-Seeding Technology for Rice in Northeastern Thailand. Plant Production Science, 22, 46-53.
https://doi.org/10.1080/1343943X.2018.1557530
|
[4]
|
Jairin, J. (2018) Genetic Improvement of Thai Aromatic Rice for Rainfed Lowlands through Molecular Breeding. In: Proceedings of the 4th International Plant Breeding Conference, Genetics Society of Malaysia, Selangor.
|
[5]
|
Bonman, J.M., Khush, G.S. and Nelson, R.J. (1992) Breeding Rice for Resistance to Pests. Annual Review of Phytopathology, 30, 507-528.
https://doi.org/10.1146/annurev.py.30.090192.002451
|
[6]
|
Zhang, Q. (2007) Strategies for Developing Green Super Rice. Proceedings of the National Academy of Sciences of the United States of America, 104, 42.
https://doi.org/10.1073/pnas.0708013104
|
[7]
|
Ballini, E., Morel, J.B., Droc, G., Price, A., Courtois, B., Notteghem, J.L. and Tharreau, D. (2008) A Genome-Wide Meta-Analysis of Rice Blast Resistance Genes and Quantitative Trait Loci Provides New Insights into Partial and Complete Resistance. Molecular Plant-Microbe Interactions, 21, 859-868.
https://doi.org/10.1094/MPMI-21-7-0859
|
[8]
|
Debnath, A., Bhutia, K.L. and Sumpi, H. (2018) Mapping and Deployment of Blast Resistance Gene in Rice—A Work in Progress. International Journal of Current Microbiology and Applied Sciences, 7, 2073-2094.
https://doi.org/10.20546/ijcmas.2018.705.243
|
[9]
|
Zhao, H., Wang, X., Jia, Y., Minkenberg, B., Wheatley, M., Fan, J., Jia, M.H., Famoso, A., Edwards, J.D., Wamishe, Y., Valent, B., Wang, G.L. and Yang, Y. (2018) The Rice Blast Resistance Gene Ptr Encodes an Atypical Protein Required for Broad-Spectrum Disease Resistance. Nature Communications, 9, 2039.
https://doi.org/10.1038/s41467-018-04369-4
|
[10]
|
Busungu, C., Taura, S., Sakagami, J. and Ichitani, K. (2016) Identification and Linkage Analysis of a New Rice Bacterial Blight Resistance Gene from XM14, a Mutant Line from IR24. Breeding Science, 66, 636-645. https://doi.org/10.1270/jsbbs.16062
|
[11]
|
Dilla-Ermita, C.J., Tandayu, E., Juanillas, V.M., Detras, J., Lozada, D.N., Dwiyanti, M.S., Cruz, C.V., Mbanjo, E.G.N, Ardales, E., Diaz, M.G., Mendioro, M., Thomson, M.J. and Kretzschmar, T. (2017) Genome-Wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci in Rice Diverse Germplasm. Rice, 10, 8.
https://doi.org/10.1186/s12284-017-0147-4
|
[12]
|
Kim, S.M. (2018) Identification of Novel Recessive Gene xa44(t) Conferring Resistance to Bacterial Blight Races in Rice by QTL Linkage Analysis Using an SNP Chip. Theoretical and Applied Genetics, 12, 2733-2743.
https://doi.org/10.1007/s00122-018-3187-2
|
[13]
|
Fujita, D., Kohli, A. and Horgan, F.G. (2013) Rice Resistance to Planthoppers and Leafhoppers. Critical Reviews in Plant Sciences, 32, 3.
https://doi.org/10.1080/07352689.2012.735986
|
[14]
|
Jairin, J., Teangdeerith, S., Leelagud, P., Kothcharerk, J., Sansen, K., Yi, M., Vanavichit, A. and Toojinda, T. (2009) Development of Rice Introgression Lines with Brown Planthopper Resistance and KDML105 Grain Quality Characteristics through Marker-Assisted Selection. Field Crops Research, 110, 263-271.
https://doi.org/10.1016/j.fcr.2008.09.009
|
[15]
|
Kumar, K.K., Kokiladevi, E., Arul, L., Varanavasiappan, S. and Sudhakar, D. (2018) Engineering Disease Resistance in Rice. In: Gosal, S. and Wani, S., Eds., Biotechnologies of Crop Improvement, Volume 2, Springer, Cham, 183-206.
https://doi.org/10.1007/978-3-319-90650-8_8
|
[16]
|
Horgan, F.G. (2018) Integrating Gene Deployment and Crop Management for Improved Rice Resistance to Asian Planthoppers. Crop Protection, 110, 21-33.
https://doi.org/10.1016/j.cropro.2018.03.013
|
[17]
|
Harini, A.S., Lakshmi, S.S., Kumar, S.S., Sivaramakrishnan, S. and Kadirvel, P. (2010) Validation and Fine-Mapping of Genetic Locus Associated with Resistance to Brown Plant Hopper [Nilaparvata lugens (Stal.)] in Rice (Oryza sativa L.). Asian Journal of Bio Science, 5, 32-37.
|
[18]
|
Jairin, J., Teangdeerith, S., Leelagud, P., Phengrat, P., Vanavichit, A. and Toojinda T. (2007) Detection of Brown Planthopper Resistance Genes from Different Rice Mapping Populations in the Same Genomic Location. Science Asia, 33, 347-352.
https://doi.org/10.2306/scienceasia1513-1874.2007.33.347
|
[19]
|
Rahman, M.L., Jiang, W., Chu, S.H., Qiao, Y., Ham, T.H., Woo, M.O., Lee, J., Khanam, M.S., Chin, J.H., Jeung, J.U., Brar, D.S., Jena, K.K. and Koh, H.J. (2009) High Resolution Mapping of Two Rice Brown Planthopper Resistance Genes, Bph20(t) and Bph21(t), Originating from Oryza minuta. Theoretical and Applied Genetics, 119, 1237-1246. https://doi.org/10.1007/s00122-009-1125-z
|
[20]
|
Rahman, L., Khanami, S., Roh, J.H. and Koh, H.J. (2011) Mapping of QTLs Involved in Resistance to Rice Blast (Magnaporthe grisea) Using Oryza minuta Introgression Lines. Czech Journal of Genetics and Plant Breeding, 47, 85-94.
https://doi.org/10.17221/19/2011-CJGPB
|
[21]
|
Kotchasatit, A. (2015) IR57514-PMI-5-B-1-2: Elite Line for Climate Change. In: Proceedings of the Rice and Temperate Cereal Crops Annual Conference, NE Rice Research Center Cluster, Ubon Ratchathani, Thailand, 60-74.
|
[22]
|
Wade, L.J., McLaren, C.G., Quintana, L., Harnpichitvitaya, D., Rajatasereekul, S., Sarawgi, A.K., Kumar, A., Ahmed, H.U., Sarwoto, Singh, A.K., Rodriguez, R., Siopongco, J. and Sakarung, S. (1999) Genotype by Environment Interactions across Diverse Rainfed Lowland Rice Environments. Field Crops Research, 64, 35-50.
https://doi.org/10.1016/S0378-4290(99)00049-0
|
[23]
|
Elshire, R.J., Glaubitz, J.C., Sun, Q., Poland, J.A., Kawamoto, K., Buckler, E.S. and Mitchell, S.E. (2011) A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species. PLoS ONE, 6, e19379.
https://doi.org/10.1371/journal.pone.0019379
|
[24]
|
IRRI (2013) Standard Evaluation System for Rice. International Rice Research Institute, Manila.
|
[25]
|
Kauffman, H.E., Reddy, A.P.K., Hsieh, S.P.Y. and Merca, S.D. (1973) An Improved Technique for Evaluating Resistance of Rice Varieties to Xanthomonas oryzae. Plant Disease Report, 57, 737-741.
|
[26]
|
Amante-Bordeos, A., Sitch, L.A., Nelson, R., Dalmacio, R.D., Oliva, N.P., Aswidinnoor, H. and Leung, H. (1992) Transfer of Bacterial Blight and Blast Resistance from the Tetraploid Wild Rice Oryza minuta to Cultivated Rice, Oryza sativa. Theoretical and Applied Genetics, 84, 345-354. https://doi.org/10.1007/BF00229493
|
[27]
|
Heinrichs, E.A., Medrano, F.G. and Rapusas, H.R. (1985) Genetic Evaluation for Insect Resistance in Rice. IRRI, Los Banos.
|
[28]
|
Jairin, J., Teangdeerith, S., Leelagud, P., Phengrat, K., Vanavichit, A. and Toojinda, T. (2007) Physical Mapping of Bph3, a Brown Planthopper Resistance Locus in Rice. Maejo International Journal of Science and Technology, 1, 166-177.
|
[29]
|
Doyle, J.J. and Doyle, J.L. (1987) A Rapid DNA Isolation Procedure for Small Quantities of Fresh Leaf Tissue. Phytochemical Bulletin, 19, 11-15.
|
[30]
|
Mascher, M., Wu, S., Amand, P.S., Stein, N. and Poland, J. (2013) Application of Genotyping-by-Sequencing on Semiconductor Sequencing Platforms: A Comparison of Genetic and Reference-Based Marker Ordering in Barley. PLoS ONE, 8, e76925. https://doi.org/10.1371/journal.pone.0076925
|
[31]
|
Kawahara, Y., de la Bastide, M., Hamilton, J.P., Kanamori, H., McCombie, W.R., Ouyang, S., Schwartz, D.C., Tanaka, T., Wu, J., Zhou, S., Childs, K.L., Davidson, R.M., Lin, H., Quesada-Ocampo, L., Vaillancourt, B., Sakai, H., Lee, S.S., Kim, J., Numa, H., Itoh, T., Buell, C.R. and Matsumoto, T. (2013) Improvement of the Oryza sativa Nipponbare Reference Genome Using Next Generation Sequence and Optical Map Data. Rice, 6, 4. https://doi.org/10.1186/1939-8433-6-4
|
[32]
|
Bradbury, P.J., Zhang, Z., Kroon, D.E., Casstevens, T.M., Ramdoss, Y. and Buckler, E.S. (2007) TASSEL: Software for Association Mapping of Complex Traits in Diverse Samples. Bioinformatics, 23, 2633-2635.
|
[33]
|
Hackett, C.A. and Broadfoot, L.B. (2003) Effects of Genotyping Errors, Missing Values and Segregation Distortion in Molecular Marker Data on the Construction of Linkage Maps. Heredity, 90, 33-38. https://doi.org/10.1038/sj.hdy.6800173
|
[34]
|
Meng, L., Li, H.H., Zhang, L.Y. and Wang, J.K. (2015) QTL IciMapping: Integrated Software for Genetic Linkage Map Construction and Quantitative Trait Locus Mapping in Biparental Populations. The Crop Journal, 3, 269-283.
https://doi.org/10.1016/j.cj.2015.01.001
|
[35]
|
Kosambi, D.D. (1944) The Estimation of Map Distance from Recombination Values. Annals of Eugenics, 12, 172-175.
https://doi.org/10.1111/j.1469-1809.1943.tb02321.x
|
[36]
|
Van Ooijen, J.W. (2004) MapQTL 5, Software for the Mapping of Quantitative Trait Loci in Experimental Populations. Kyazma B.V., Wageningen.
|
[37]
|
Kourelis, J. and van der Hoorn, R.A.L. (2018) Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function. Plant Cell, 30, 285-299. https://doi.org/10.1105/tpc.17.00579
|
[38]
|
Mekonnen, T., Haileselassie, T. and Tesfaye, K. (2017) Identification, Mapping and Pyramiding of Genes/Quantitative Trait Loci (QTLs) for Durable Resistance of Crops to Biotic Stresses. Journal of Plant Pathology and Microbiology, 8, 412.
https://doi.org/10.4172/2157-7471.1000412
|
[39]
|
Li, X., Zhai, H., Wan, J., Ma, L., Zhuang, J., Liu, G. and Yang, C. (2004) Mapping of a New Gene Wbph6(t) Resistant to the Whitebacked Planthopper, Sogatella furcifera, in Rice. Rice Science, 11, 86-90.
|
[40]
|
Tan, G.X., Weng, Q.M., Ren, X., Huang, Z., Zhu, L.L. and He, G.C. (2004) Two Whitebacked Planthopper Resistance Genes in Rice Share the Same Loci with Those for Brown Planthopper Resistance. Heredity, 92, 212-217.
https://doi.org/10.1038/sj.hdy.6800398
|
[41]
|
He, J., Zhao, X., Laroche, A., Lu, Z.X., Liu, H.K. and Li, Z. (2014) Genotyping-by-Sequencing (GBS), an Ultimate Marker-Assisted Selection (MAS) Tool to Accelerate Plant Breeding. Frontiers in Plant Science, 5, 484.
https://doi.org/10.3389/fpls.2014.00484
|
[42]
|
Jairin, J., Phengrat, K., Teangdeerith, S., Vanavichit, A. and Toojinda, T. (2007) Mapping of a Broad-Spectrum Brown Planthopper Resistance Gene, Bph3, on Rice Chromosome 6. Molecular Breeding, 19, 35-44.
https://doi.org/10.1007/s11032-006-9040-3
|
[43]
|
Kang, K., Wang, Y., Peng, S., Zhang, Y., Xiao, Y., Wang, D., Qu, S., Li, Z., Yan, S., Wang, Z., Liu, W., Ning, Y., Korniliev, P., Leung, H., Mezey, J., McCouch, S.R. and Wang, G.L. (2016) Dissection of the Genetic Architecture of Rice Resistance to the Blast Fungus Magnaporthe oryzae. Molecular Plant Pathology, 17, 959-972.
https://doi.org/10.1111/mpp.12340
|
[44]
|
Pan, Q.H., Hu, Z.D., Takatoshi, T. and Wang, L. (2003) Fine Mapping of the Rice Blast Resistance Gene Pi15, Linked to Pii, on Rice Chromosome 9. Acta Botanica Sinica, 45, 871-877.
|
[45]
|
Jiang, N., Li, Z., Wu, J., Wang, Y., Wu, L., Wang, S., Wang, D., Wen, T., Liang, Y., Sun, P., Liu, J., Dai, L., Wang, Z., Wang, C., Luo, M., Liu, X. and Wang, G.L. (2012) Molecular Mapping of the Pi2/9 Allelic Gene Pi2-2 Conferring Broad-Spectrum Resistance to Magnaporthe oryzae in the Rice Cultivar Jefferson. Rice, 5, 29.
https://doi.org/10.1186/1939-8433-5-29
|
[46]
|
Ashikawa, I., Hayashi, N., Abe, F., Wu, J. and Matsumoto, T. (2012) Characterization of the Rice Blast Resistance Gene Pik Cloned from Kanto51. Molecular Breeding, 30, 485-494. https://doi.org/10.1007/s11032-011-9638-y
|
[47]
|
Jia, Y. and Martin, R. (2008) Identification of a New Locus, Ptr(t), Required for Rice Blast Resistance Gene Pi-ta-Mediated Resistance. Molecular Plant-Microbe Interactions, 21, 396-403. https://doi.org/10.1094/MPMI-21-4-0396
|
[48]
|
Ren, J., Gao, F., Wu, X., Lu, X., Zeng, L., Lv, J., Su, X., Luo, H. and Ren, G. (2016) Bph32, a Novel Gene Encoding an Unknown SCR Domain-Containing Protein, Confers Resistance against the Brown Planthopper in Rice. Scientific Reports, 6, Article No. 37645. https://doi.org/10.1038/srep37645
|
[49]
|
Sun, L., Su, C., Wang, C., Zhai, H. and Wan, J. (2005) Mapping of a Major Resistance Gene to the Brown Planthopper in the Rice Cultivar Rathu Heenati. Breeding Science, 55, 391-396. https://doi.org/10.1270/jsbbs.55.391
|
[50]
|
He, P., Li, J.Z., Zheng, X.W., Shen, L.S., Lu, C.F., Chen, Y. and Zhu, L.H. (2001) Comparison of Molecular Linkage Maps and Agronomic Trait Loci between DH and RIL Populations Derived from the Same Rice Cross. Crop Science, 41, 1240-1246. https://doi.org/10.2135/cropsci2001.4141240x
|
[51]
|
Lu, C., Shen, L., Tan, Z., Xu, Y., He, P., Chen, Y. and Zhu, L. (1996) Comparative Mapping of QTLs for Agronomic Traits of Rice across Environments Using a Doubled Haploid Population. Theoretical and Applied Genetics, 93, 1211-1217.
https://doi.org/10.1007/BF00223452
|
[52]
|
Jantaboon, J., Siangliw, M., Im-mark, S., Jamboonsri, W., Vanavichit, A. and Toojinda, T. (2011) Ideotype Breeding for Submergence Tolerance and Cooking Quality by Marker-Assisted Selection in Rice. Field Crops Research, 123, 206-213.
https://doi.org/10.1016/j.fcr.2011.05.001
|
[53]
|
Jongdee, B., Pantuwan, G., Fukai, S. and Fischer, K. (2006) Improving Drought Tolerance in Rainfed Lowland Rice: An Example from Thailand. Agricultural Water Management, 80, 225-240. https://doi.org/10.1016/j.agwat.2005.07.015
|
[54]
|
Ouk, M., Basnayake, J., Tsubo, M., Fukai, S., Fischer, K.S., Cooper, M. and Nesbitt, H. (2006) Use of Drought Response Index for Identification of Drought Tolerant Genotypes in Rainfed Lowland Rice. Field Crops Research, 99, 48-58.
https://doi.org/10.1016/j.fcr.2006.03.003
|
[55]
|
Kim, S.M., Suh, J.P., Qin, Y., Noh, T.H., Reinke, R.F. and Jena, K.K. (2015) Identification and Fine-Mapping of a New Resistance Gene, Xa40, Conferring Resistance to Bacterial Blight Races in Rice (Oryza sativa L.). Theoretical and Applied Genetics, 128, 1933-1943. https://doi.org/10.1007/s00122-015-2557-2
|
[56]
|
Li, H.J., Li, X.H., Xiao, J.H., Wing, R.A. and Wang, S.P. (2012) Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice. Molecular Plant, 5, 281-290. https://doi.org/10.1093/mp/ssr079
|
[57]
|
Sun, X., Yang, Z., Wang, S. and Zhang, Q. (2003) Identification of a 47-kb DNA Fragment Containing Xa4, a Locus for Bacterial Blight Resistance in Rice. Theoretical and Applied Genetics, 106, 683-687. https://doi.org/10.1007/s00122-002-1117-8
|
[58]
|
Fukuoka, S., Saka, N., Mizukami, Y., Koga, H., Yamanouchi, U., Yoshioka, Y., Hayashi, N., Ebana, K., Mizobuchi, R. and Yano, M. (2015) Gene Pyramiding Enhances Durable Blast Disease Resistance in Rice. Scientific Reports, 5, Article No. 7773. https://doi.org/10.1038/srep07773
|
[59]
|
Li, Z.K., Luo, L.J., Mei, H.W., Paterson, A.H., Zhao, X.H., Zhong, D.B., Wang, Y.P., Yu, X.Q., Zhu, L., Tabien, R., Stansel, J.W. and Ying, C.S. (1999) A “Defeated” Rice Resistance Gene Acts as a QTL against a Virulent Strain of Xanthomonas oryzae pv. oryzae. Molecular and General Genetics, 261, 58-63.
https://doi.org/10.1007/s004380050941
|
[60]
|
Miyamoto, M., Yano, M. and Hirasawa, H. (2001) Mapping of Quantitative Trait Loci Conferring Blast Field Resistance in the Japanese Upland Rice Variety Kahei. Breeding Science, 51, 257-261. https://doi.org/10.1270/jsbbs.51.257
|
[61]
|
Sato, H., Takeuchi, Y., Hirabayashi, H., Nemoto, H., Hirayama, M., Kato, H., Imbe, T. and Ando, I. (2006) Mapping QTLs for Field Resistance to Rice Blast in the Japanese Upland Rice Variety Norin 12. Breeding Science, 56, 415-418.
https://doi.org/10.1270/jsbbs.56.415
|