Senescence process and oxidative stresses induce changes in plant genomic DNA quality

Abstract

Senescence or programmed cell death is a process that interacts with many biochemical and physiological changes in living organism and is generally induced by aging. Many environmental stresses that accelerate the production of activated oxygen can also induce senescence artificially. One of the important aspects of senescence is possibly degradation of macromolecules such as DNA. It is believed that the random amplification of polymorphic DNA (RAPD) technique is a good method to compare the DNA quality of juvenile and senescence samples in which oxidative stress is induced. In this study, juvenile, senescence and plant paraquat treated leaves from tomato, tobacco and rose, as well as juvenile and senescence human tissues were processed for DNA extraction followed by RAPD technique. We discovered that plant and human genomes are influenced by senescence and environmental stresses underwent genome diversity. Using some molecular markers proved that senescence and oxidative treated samples show different DNA pattern compare to the juvenile-un- treated samples. We also concluded that RAPD technique can be used as a useful tool in genomics study to provide researchers reliable information of DNA quality and can effectively help to resolve the environment condition.

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Hatami-Gigloo, S. , Mortazavian, S. , Hatami-Gigloo, M. and Ghorbani, M. (2013) Senescence process and oxidative stresses induce changes in plant genomic DNA quality. Advances in Bioscience and Biotechnology, 4, 383-387. doi: 10.4236/abb.2013.43051.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] Arora, S.K., Wolfgang, M.C., Lory, S. and Ramphal, R.J. (2004) Sequence polymorphism in the glycosylation island and flagellins of Pseudomonas aeruginosa. Bacteriology, 186, 2115-2122.
[2] Williams, J.G., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
[3] Torezan J.M.D., Souza R.F.D., Ruas P.M., Ruas C.D., Camargo E.H and Vanzela A.L.L. (2005) Genetic variability of pre and post-fragmentation cohorts of Aspidosperma polyneuron Muell. Arg. (Apocynaceae). Brazilian Archives of Biology and Technology, 48, 171-180.
[4] Atienzar, F.A. and Jha, A.N. (2006) The random amplified polymorphic DNA (RAPD) assay and related techniques applied to genotoxicity and carcinogenesis studies: A critical review. Mutation Research/Reviews in Mutation Research, 613, 76-102. doi:10.1016/j.mrrev.2006.06.001
[5] Corich, V., Mattiazzi, A., Soldati, E., Carraro, A. and Giacomini, A. (2005) Sau-PCR, a Novel Amplification Technique for Genetic Fingerprinting of Microorganisms. Applied and Environmental Microbiology, 71, 6401-6406. doi:10.1128/AEM.71.10.6401-6406.2005
[6] Siwoski, A., Ishkanian, A., Garnis, C., Zhang, L., Rosin, M. and Lam, W.L. (2002) An efficient method for the assessment of DNA quality of archival microdissected specimens. Modern Pathology, 15, 889-892. doi:10.1097/01.MP.0000024288.63070.4F
[7] Liu, C., Bai, B., Skogerb?, G., Cai, L., Deng, W., Zhang, Y., Bu, D., Zhao, Y. and Chen, R. (2005) NONCODE: An integrated knowledge database of non-coding RNAs. Nucleic Acids Research, 33, D112-D115.
[8] Ranjan, R., Marczewski, A., Chojnacki, T., Hertel, J. and Swiezewska, E. (2001) Search for polyprenols in leaves of evergreen and deciduous Ericaceae plants. Acta Biochimica Polonica, 48, 579-584.
[9] Khanna-Chopra, R. (2012) Leaf senescence and abiotic stresses share reactive oxygen species-mediated chloroplast degradation. Protoplasma, 249, 469-481. doi:10.1007/s00709-011-0308-z
[10] Donahue, J.L., Okpodu, C.M., Cramer, C.L., Grabau, E.A. and Alscher, R.G. (1997) Responses of antioxidants to paraquat in pea leaves (relationships to resistance). Plant Physiology, 113, 249-257.
[11] Shaaltiel, Y. and Gressel, J. (1987) Evidence that paraquat transiently inhibits leaf chloroplast reactions in resistant plants. Plant Physiology, 85, 869-871. doi:10.1104/pp.85.4.869
[12] Kryston, T.B., Georgiev, A.B., Pissis, P. and Georgakilas, A.G. (2011) Role of oxidative stress and DNA damage in human carcinogenesis. Mutation Research, 711, 193-201.
[13] Imlay, J.A. and Linn, S. (1986) DNA damage and oxygen radical toxicity. Science, 240, 1302-1309. doi:10.1126/science.3287616
[14] Ishida, H., Makino, A. and Mae, T. (1999) Fragmentation of the large subunit of ribulose-1,5-bisphosphate carboxylase by reactive oxygen species occurs near Gly-329. Journal of Biological Chemistry, 274, 5222-5226.
[15] Desimone, M., Henke, A. and Wagner, E. (1996) Oxidative stress induces partial degradation of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase in isolated chloroplasts of barley. Plant Physiology, 111, 789-796.
[16] Nakano, T., Murakami, S., Shoji, T., Yoshida, S., Yamada, Y. and Sato, F. (1997) A novel protein with DNA binding activity from tobacco chloroplast nucleoids. Plant Cell, 9, 1673-1682.
[17] Dalling, M.J., Hucklesby, D.P. and Hageman, R.H. (1987) A comparison of nitrite reductase enzymes from green leaves, scutella, and roots of corn (Zea mays L.). Plant Physiology, 51, 481-484. doi:10.1104/pp.51.3.481
[18] Kato, Y., Yamamoto, Y., Murakami, S. and Sato, F. (2005) Post-translational regulation of CND41 protease activity in senescent tobacco leaves. Planta, 222, 643-651. doi:10.1007/s00425-005-0011-4
[19] Landry, L.G. and Pell, E.J. (1993) Modification of Rubisco and Altered Proteolytic Activity in O3-Stressed Hybrid Poplar (Populus maximowizii x trichocarpa). Plant Physiology, 101, 1355-1362.
[20] Eckardt, N.A. and Pell, E.J. (1996) Effects of ethylenediurea (EDU) on ozone-induced acceleration of foliar senescence in potato (Solanum tuberosum L.). Environmental Pollution, 92, 299-306. doi:10.1016/0269-7491(95)00111-5
[21] Zhou, Y.H., Yu, J.Q., Mao, W.H., Huang, L.F., Song, X.S. and Nogués, S. (2006) Genotypic variation of rubisco expression, photosynthetic electron flow and antioxidant metabolism in the chloroplasts of chill-exposed cucumber plants. Plant and Cell Physiology, 47, 192-199. doi:10.1093/pcp/pci234
[22] Feller, U., Anders, I. and Mae, T. (2008) Rubiscolytics: Fate of Rubisco after its enzymatic function in a cell is terminated. Journal of Experimental Botany, 59, 1615- 1624. doi:10.1093/jxb/erm242
[23] Kato, Y., Murakami, S., Yamamoto, Y., Chatani, H., Kondo, Y., Nakano, T., Yokota, A. and Sato, F. (2004) The DNA-binding protease, CND41, and the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase in senescent leaves of tobacco. Planta, 220, 97-104. doi:10.1007/s00425-004-1328-0
[24] Krizman, M., Jakse, J., Baricevic, D., Javornik, B. and Prosek, M. (2006) Robust CTAB-activated charcoal protocol for plant DNA extraction. Acta Agriculture Slovenica, 87, 427-433.
[25] Sambrook, J. and Russell, D.W. (2001) Molecular cloning: A laboratory manual. Vol. 1, Cold Spring Harbor Laboratory Press, New York.

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